Bioinformatics Programmer Resume Samples

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E Walker

Eduardo

Walker

496 Howe Forks

New York

+1 (555) 753 3368

496 Howe Forks

New York

Phone

p +1 (555) 753 3368

Experience Experience

Detroit, MI

Bioinformatics Programmer Analyst

Detroit, MI

Lockman Group

Detroit, MI

Bioinformatics Programmer Analyst

Developing, improving, and maintaining software related to long-term projects in the laboratory
Complies with company quality management systems, policies and procedures
Applying software debugging and profiling tools and principles to diagnose and resolve problems, including both bugs and performance problems
Participates in process and operation improvement opportunities
Development of new methods for resolving problems/issues
Implementation of algorithms, including prototypes for commercial software development
Data mining in large internal and external databases

Detroit, MI

Senior Bioinformatics Programmer

Detroit, MI

Kovacek, Gutkowski and Kuhlman

Detroit, MI

Senior Bioinformatics Programmer

Maintain and Develop NGSI software
Production Integration with Data Warehouse, DNAnexus
Integrate into production environment
Parliament, Eris, CNV tools, Afterburners, Annotation
May provide technical guidance and work direction to lower level bioinformatics and information systems personnel
Applies existing custom bioinformatics software to both well-defined and moderately complex problems
Designs, codes, tests, debugs, and maintains programs and research software for bioinformatics applications

present

Phoenix, AZ

Lead Bioinformatics Programmer

Phoenix, AZ

Kassulke Inc

present

Phoenix, AZ

Lead Bioinformatics Programmer

present

Pipeline Maintenance and Development: PM, LIMS, QC, IT, Clinical feature requests
Maintain and develop NGSI software
Advanced Ticket Resolution
Production Integration with Hadoop Data Warehouse, DNAnexus
Continuous Integration Testing
Novel Protocol Implementation
HGSC Software Engineering

Education Education

Bachelor’s Degree in Computer Science

University of Washington

Bachelor’s Degree in Computer Science

Skills Skills

Basic knowledge of software engineering principles
Demonstrated experience utilizing descriptive and inferential techniques via one or more sophisticated statistical software packages or applications (e.g., SAS or other statistical or modeling programs)
Demonstrated experience implementing processes to resolve data quality issues or ensure consistency between multiple reporting systems
Strong understanding of healthcare systems/healthcare terminology
Ability to transfer information/knowledge of analytical skills in a learning environment
Excellent communication and collaboration skills. Capable of working in a fast-paced, team based research environment with shared deadlines and project tasks
Demonstrable skill with at least one programming language (Java, Perl), scripting language (Python, C/C++) and development with open source tools, libraries and relational databases (MySQL)
Proficiency in Linux/UNIX environment
Strong knowledge of at least one programming language
Current knowledge of latest software and design standards

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Bioinformatics Programmer Resume Examples & Samples

Required: Bachelor's degree in Computer Science or Biological Sciences
Preferred: Advanced degree in Bioinformatics, or Computer Sciences
Required: Two years experience in scientific programming with applications to biological research or a Master's degree in Computer Science or Biological Sciences
Required: Experience with Perl, Python, or Ruby. Experience with HTML, CGI, relation databases and SQL. Programming in a UNIX/LINUX environment
Preferred: Next Generation sequencing experience, Molecular biology experience, Bioinformatics experience and developing in cloud environment preferred
Preferred: Experience with C++ and programming using UNIX/LINUX clusters

Bioinformatics Programmer Resume Examples & Samples

Analyze massive datasets
Apply existing and novel algorithms to three-dimensional genome maps
Write and communicate findings to others in a clear manner
Strong programming skills and experience in algorithm development (using Python, C++, Java, etc.) Experience with analytics on big data sets is a plus

Bioinformatics Programmer Analyst Resume Examples & Samples

Developing, improving, and maintaining software related to long-term projects in the laboratory
Communicating with users of the software to obtain feedback, understand and fix programming mistakes, understand and implement requested new features
Applying software debugging and profiling tools and principles to diagnose and resolve problems, including both bugs and performance problems
Applying principles of programming and computer architecture to adapt the software to run efficiently on non-straightforward computing architectures such as many-core or GPU architectures
Maintaining the computer systems used by the lab, including: ensuring that appropriate software is installed, up to date, and ready to use by laboratory members; diagnosing outages and performance problems; maintaining online services that are available to off-campus users, such as databases and websites
Delegating system administration work to IT staff as appropriate

Bioinformatics Programmer Resume Examples & Samples

Minimum Education Required: Bachelor's degree in Computer Science or Biological Sciences
Preferred: Advanced degree in Bioinformatics/Computer Science
Minimum Job Experience Required: Two years’ experience in scientific programming with applications to biological research or a Master's degree in Computer Science or Biological Sciences
Required: Experience with Perl, HTML, CGI, relation databases and SQL
Programming in a UNIX/LINUX environment
Next Generation sequence analysis experience preferred
Molecular biology experience highly encouraged
Bioinformatics experience highly encouraged
Developing in cloud environment a plus

Lead Bioinformatics Programmer Resume Examples & Samples

Pipeline Maintenance and Development: PM, LIMS, QC, IT, Clinical feature requests
Novel Protocol Implementation
Production Integration with Hadoop Data Warehouse, DNAnexus
Maintain and develop NGSI software
Variant Calling, Annotation, Quality Control software
5 years’ experience in scientific programming with applications to genome research or a Master’s degree in Computer Science or Biological Sciences and three years' of directly related work experience
Experience in the following:Unix / Bash / Command Line Interface, Programming Language (python preferred; ruby, java, perl, C++), NGS tools, Bamtools, Bedtools, Picard, GATK, NGS formats, BAM/SAM/CRAM, VCF, bed, fastq, High Performance Compute Environment (e.g., Moab), Illumina Whole-Genome, Whole Exome, Capture NGS data, Software Development, github/sourceforge

Bioinformatics Programmer Resume Examples & Samples

Prepares detailed specifications and algorithms from which programs will be written
Applies existing custom bioinformatics software to both well-defined and moderately complex problems
Designs, codes, tests, debugs, and maintains programs and research software for bioinformatics applications
Researches, assesses, imports, configures, and customizes third-party bioinformatics software
Advises on hardware and software decisions related to efficient application of implemented software
May provide technical guidance and work direction to lower level bioinformatics and information systems personnel
Two years of experience in scientific programming with applications to biological research or a Master's degree in Computer Science or Biological Sciences
Experience with Perl, HTML, CGI, relation databases and SQL. Programming in a UNIX/LINUX environment

Senior Bioinformatics Programmer Resume Examples & Samples

Continuous Integration Testing
Advanced Ticket Resolution
Production Integration with Data Warehouse, DNAnexus
HGSC Software Engineering
Maintain and Develop NGSI software
Integrate into production environment
Parliament, Eris, CNV tools, Afterburners, Annotation
B.S in Bioinformatics, Computer Science
3 years’ experience in scientific programming with applications to genome research or a Master’s degree in Computer Science or Biological Sciences and 1 year of directly related work experience
Experience in the following: Unix / Bash / Command Line Interface, Programming Language (python preferred; ruby, java, perl, C++), NGS tools, Bamtools, Bedtools, Picard, GATK, NGS formats, BAM/SAM/CRAM, VCF, bed, fastq, High Performance Compute Environment (e.g., moab), Illumina Whole-Genome, Whole Exome, Capture NGS data, Software Development, github/sourceforge

Bioinformatics Programmer Resume Examples & Samples

Maintain the existing Exome, Whole Genome and RNA Seq variant analysis pipelines and continually identify novel tools and annotation databases to improve the efficiency, sensitivity and functionality of the results
Identify bioinformatics tools or develop, thoroughly test and deploy novel software in the absence of an existing alternative and automate workflows for various routine bioinformatics analysis tasks
Provide high quality data analysis, generate publication quality reports and plots for a diverse variety of bioinformatics challenges while working with collaborators from diverse scientific research and clinical backgrounds
Identify new analysis methods and suggest informatics solutions for various biological problems within the lab
Thorough understanding of bioinformatics concepts such as sequence alignment, duplication removal, sequence retrieval, variant calling, gene and functional annotation, isoform and gene expression is essential to succeed in this role
Excellent programming skill in at least one scripting language such as Perl (preferred), Python or Ruby is required, programming knowledge in at least one of Java, C, C++, knowledge of SQL is useful 5. Must maintain well documented tested code and thoroughly document analysis results
Ability to perform data wrangling, statistical analysis and plotting in R is essential
Must be comfortable working in a Unix/Linux operating system and knowledge of command line tools is essential
Strong knowledge of commonly used bioinformatics packages such as the Genome Analysis Tool Kit (GATK), BWA, Bowtie, SAMtools, Picard, IGV, Tophat, Cufflinks, Annovar, BEDtools etc and ability to apply them to regular Bioinformatics problems is necessary
Knowledge of working with a high performance computing (HPC) cluster such as LSF, Sun Grid Engine (SGE) or MOAB is useful
Familiarity with biological data repositories such as the UCSC Genome Browser, NCBI, 1000 genomes, dbNSFP, Exome Aggregation Consortium (ExAC), BioMart etc and their associated APIs to retrieve data is essential
Baylor College of Medicine is a highly collaborative work environment and as such strong communication skills and ability to interact with other researchers from diverse scientific backgrounds is mandatory
Ability to multi task while working independently and exercising good judgment in terms of meeting deadlines is essential
Must be motivated to learn new technologies and contribute towards publications in peer reviewed journals

Bioinformatics Programmer Analyst Resume Examples & Samples

Advanced genomic analysis of complex variants from plant and animal genomes
Data mining in large internal and external databases
Data analysis of complex datasets from our internal R&D labs as well as customer data
Creating/maintaining internal software tools and methods
Implementation of algorithms, including prototypes for commercial software development
Development of new methods for resolving problems/issues
Analysis consultation with Affymetrix scientists
Communication of analyses and results to expert audiences
Experience with big data and statistical analysis
Ability to query database with SQL
Experience with microarray analysis is desirable
Experience with the genetics of complex plant and animal genomes is a plus
Experience with modeling of data for microbiome analysis is a plus
Excellent communication skills and ability to work in a multidisciplinary team

Bioinformatics Programmer Analyst Resume Examples & Samples

Data mining in Affymetrix’ proprietary database and public database
Genotyping microarray design in collaboration with customers and researchers
Analysis of large datasets, including internal data and customers’ experimental results
Development of algorithms for genotyping, improvement of current and development of new QC metrics, assessing and improving probe performance through novel probe design
Interacts with scientists across the organization
Presents results both internally as well at scientific meetings and conferences
Participates in process and operation improvement opportunities
Responds to internal and external inquiries
Complies with company quality management systems, policies and procedures
Provides mentorship, if applicable
Additional duties/responsibilities according to business needs

Bioinformatics Programmer Resume Examples & Samples

Support routine NGSI production efforts: storage management, cluster health, pipeline troubleshooting
Work with NGSI Production team to innovate improvements to Sequencing Pipelines
Provide excellent customer service to other HGSC groups and outside collaborators through ticketing systems

Lead Bioinformatics Programmer Resume Examples & Samples

Bachelor’s degree in Computer Science or Biological Sciences
Five years experience in scientific programming with applications to genomic research or a Master's degree in Computer Science or Biological Sciences and three years related work experience
Experience with Perl, Python, HTML, relational databases and SQL and programming in a UNIX/LINUX environment

Bioinformatics Programmer Resume Examples & Samples

Advanced degree in Biology, Computational Biology, Bioinformatics or related field is preferred
Technical expertise in genetics, molecular biology, or bioinformatics
Experience with genomics laboratory techniques
Experience working in academic environments
Experience with user support
Current knowledge of latest software and design standards
Ability to define and solve logical problems for technical applications
Knowledge of and ability to select, adapt, and effectively use a variety of programming methods
Ability to recognize and recommend needed changes in user and/or operations procedures
Basic knowledge of software engineering principles
Strong knowledge of at least one programming language

Bioinformatics Programmer Resume Examples & Samples

Bachelor's degree in computer science, bioinformatics or related field with some biology background or an equivalent combination of education and experience
Strong theoretical knowledge and independent experimental ability to perform applied bioinformatics in a molecular biology research laboratory
Demonstrated conceptual/theoretical experience in bioinformatics analysis of DNA/RNA related data
Ability to develop, optimize, debug tools and scripts in scientific programming in any of using Java, R, C++, and Python
Proficiency with computer hardware and software including different operating system environments (such as Mac, Windows and UNIX) and High Performance Computing (HPC) clusters, schedulers and tools. Proven ability to update skills and knowledge as needed
Knowledge, skill and ability to perform statistical analysis including experience with statistical analyses and data visualization in R
Demonstrated experience working in a Linux/Unix environment
Demonstrated ability to interpret/coordinate research protocols such as RNASeq, RipSeq and CLIPSeq and the corresponding data requirements
Knowledge of database development and maintenance and proven experience with biological databases used in biomedical studies
Prior experience working in an environment where research relates to human diseases and private health
Master or PhD degree in bioinformatics, computational molecular biology or related field and/or an equivalent combination of education and experience

Bioinformatics Programmer Resume Examples & Samples

Basic knowledge of bioinformatics methods and data structures. Advanced knowledge about protein structure and structural bioinformatics
Basic knowledge of applications programming and web development. Experience using IDEs, such as Eclipse, and source code repositories, such as Git
Advanced experience in software development using Python and Java. Experience with Python libraries, such as Numpy and Scikit. Experience using Jupyter or iPython Notebook. Experience with BioPython or BioJava libraries
Knowledge of Big Data frameworks, such as Apache Spark or Hadoop
In-depth knowledge of Machine Learning, in particular Artificial Neural Networks and application to bioinformatics. Experience with Keras and TensorFlow Deep Learning libraries. Experience with training and validating Artificial Neural Networks

Bioinformatics Programmer Resume Examples & Samples

Advanced project management skills. Ability to assess a broad spectrum of technical and resource needs and demands and establish priorities, delegate, and manage sub-projects simultaneously
In-depth knowledge of web, application and data security concepts and methods. In depth knowledge of network security, internal operating systems, communication protocols, computer security, database development, and system utilities (Windows, UNIX, Linux, MAC OS X). Demonstrated technical mastery of internal systems, network security databases, and operating systems. Familiarity with various data mining tools and software. Demonstrated experience with electronic medical records and data warehouses
Advanced expertise in scientific software development in the life sciences using the common object-oriented programming languages. Track record of productivity in delivering well-designed scientific software in an industrial or academic environment. Extensive experience employing design patters and in following industry adopted software development best practices. Proficient in software life cycle management. Advanced understanding of continuous integration, domain and test-driven design, and software engineering principles
Demonstrated experience using machine learning tools and big data frameworks for scalable application development

Bioinformatics Programmer Resume Examples & Samples

Proficiency in the use of bioinformatics/statistical software (eg. GATK, BCFtools, BLAST, BWA, PLINK, etc), and publicly available genetics databases (eg. ExAC, ESP, ClinVar, GenBank, Ensemble, KEGG, HGMD, OMIM, etc.)
Strong skills in the application of statistical methods for analysis of genetic data
Must reside in the United States

Bioinformatics Programmer Resume Examples & Samples

Bachelor's degree in biological science, computational / programming, or related area and three to five years of experience / or equivalent experience / training
Experienced with R programming
Experienced with Unix
Thorough knowledge of bioinformatics methods
Thorough knowledge of bioinformatics programming design, modification and implementation
Master's degree in biological science, computational/programming
Experienced with open-source development (e.g. maintenance, contributions)
Experienced with Python programming
Experienced with compute clusters and job schedulers
Experienced with version control (e.g. Git) and corresponding repositories (e.g. GitHub)
Experience with cloud computing
Knowledge of relevant biology

Bioinformatics Programmer Resume Examples & Samples

Bachelor's degree in computational / programming, or related area and / or equivalent experience / training
Thorough knowledge of bioinformatics methods, applications programming, web development and data structures
Ability to communicate technical information in a clear and concise manner
Ability to interface with management on a regular basis
Self-motivated, work independently or as part of a team, able to learn quickly, meet deadlines and demonstrate problem solving skills
B.S. degree in Biological Sciences
Understanding of relational databases, web interfaces, and operating systems
Thorough knowledge of modern biology and applicable field of research
Communication skills to work with both technical and non-technical personnel in multiple fields of expertise and at various levels in the organization
Thorough knowledge of web, application and data security concepts and methods

Bioinformatics Programmer Resume Examples & Samples

Bachelor's degree in biological science, computational / programming, or related area and 10+ years of relevant experience, and / or equivalent experience / training
Expert knowledge of bioinformatics methods, applications programming, web development and data structures
Expert knowledge of bioinformatics programming design, modification and implementation
Expert understanding of relational databases, web interfaces and operating systems
Expert knowledge of modern biology and applicable field of research
Expert knowledge of web, application and data security concepts and methods
Demonstrated application knowledge of Large Scale data in the field of Health/Medicine data
Demonstrated knowledge and experience in Data Sciences, including data mining, machine learning, advanced statistics, data curation, data management, data quality
Highly developed project management skills
Highly developed interpersonal skills in order to work with both technical and non-technical personnel at all levels internally and externally to the organization
Highly developed ability to interface with management on a regular basis
Ability to lead a team, meet deadlines and demonstrate highly developed problem solving skills
Master’s degree in biological science, computational/programming, or related area and 10+ years relevant experience, and/or equivalent experience/training

Bioinformatics Programmer Resume Examples & Samples

Bachelor's degree in biological science, computational / programming, or related area and 5-10 years relevant experience, and / or equivalent experience / training
In-depth knowledge of web, application and data security concepts and methods
Advanced knowledge of privacy, security, HIPAA rules and regulations with ability to apply directly to data security and information access
Advanced project management skills
Advanced interpersonal skills in order to work with both technical and non-technical personnel at all levels in the organization, including senior project leadership, internal and external audiences
Advanced ability to interface with management on a regular basis
Ability to lead a team, meet deadlines and demonstrate advanced problem solving skills
Master’s degree in biomedical computation or computer science and five to seven years of relevant experience, and/or equivalent experience/training
Demonstrated very large scale (meta data) data application knowledge in the field of Health/Medicine

Bioinformatics Programmer Resume Examples & Samples

Bachelor's degree in biological science, computational / programming, Human Genetics or related area and three to five years relevant experience and / or equivalent experience / training
Proficient at Perl and/or Python and/or R programming
Prior experience working in a high performance computing environment
Prior experiences with Amazon Web Services
Prior work with large amounts of genomics and other biological data
Prior systems administration with UNIX/Linux
Familiarity with statistical analysis
Demonstrates excellent attendance and professionalism
Interested in learning about genetics
Attention to detail
Ability to pick up new techniques quickly
Proven record of excelling in a team environment (5 plus individuals) but still possess an independent work ethic
Proven ability to work within a team to accomplish specific goals at specified times
Outstanding job references

Bioinformatics Programmer Resume Examples & Samples

Proficiency in Linux/UNIX environment
Demonstrable skill with at least one programming language (Java, Perl), scripting language (Python, C/C++) and development with open source tools, libraries and relational databases (MySQL)
1- 2 years software engineering experience and
HPC/cluster computing experience, PBS/Grid Engine job submission and management, parallel programming libraries and frameworks

Bioinformatics Programmer Resume Examples & Samples

Prepares detailed specifications and algorithms for genome sequence analysis from which programs will be written
Applies existing custom bioinformatics software to both well-defined and moderately complex genome analysis problems
Designs, codes, tests, debugs, and maintains programs and research software for genome sequence analysis applications

Bioinformatics Programmer Resume Examples & Samples

BA/BS degree in applied mathematics
Practical experience in computational modeling of biological data
Proficiency in programming with Python, Matlab or R
Experience with clinical electronic medical record software, including Epic or similar systems
Prior experience with algorithm development in single-cell analysis
Willingness and ability to learn new methods and skills for changing research priorities
Prior experience in writing reports to include results and tentative conclusions from analyses of primary data

Bioinformatics Programmer Resume Examples & Samples

Ability to transfer information/knowledge of analytical skills in a learning environment
Strong understanding of healthcare systems/healthcare terminology
Demonstrated experience implementing processes to resolve data quality issues or ensure consistency between multiple reporting systems
Demonstrated experience utilizing descriptive and inferential techniques via one or more sophisticated statistical software packages or applications (e.g., SAS or other statistical or modeling programs)
Knowledge of Military Health and/or TRICARE
Graduate degree in statistics, operations research, mathematics, computer science, economics, information systems, finance, healthcare or business administration or a related field
Position requires U. S. citizenship and the ability to obtain a Public Trust clearance
Demonstrated programming experience with one or more of the following analytical software products including (but not limited to) SAS, SQL, Business Objects, and advanced Excel
Ability to work and solve complex problems and data integrity issues with limited guidance/direction
Strong applied mathematical, economic, and financial analysis skills
Ability to compile, manipulate, and interpret very large data sets (data extraction/data mining)
Ability to complete simultaneously multiple projects with aggressive suspense dates
Bachelors degree from an accredited college in a related discipline, or equivalent experience/combined education, with 1-2 years of professional experience. Considered experienced, but still a learner

Bioinformatics Programmer Resume Examples & Samples

Bachelor's degree in biological science, computational / programming, or related area and three years relevant experience, and / or equivalent experience / training
Working knowledge of bioinformatics methods and data structures
Working knowledge of modern biology and applicable field of research
Working knowledge of application and data security concepts
Working project management skills
Interpersonal skills in order to work with both technical and non-technical personnel at various levels in the organization
Self-motivated, able to learn quickly, meet deadlines and demonstrate problem solving skills
Master’s degree in bioinformatics or computer science
Working knowledge of applications programming and web development